Index

A

aggregate() (in module code.gomap_aggregate)

aggregate_datasets() (in module code.pipeline.make_aggregate)

C

check_output_and_run() (in module code.utils.basic_utils) clean_duplicate() (in module code.pipeline.make_aggregate) clean_redundant() (in module code.pipeline.make_aggregate) code (module) code.gomap_aggregate (module) code.gomap_setup (module) code.pipeline (module) code.pipeline.make_aggregate (module)

code.pipeline.mixed2gaf (module) code.pipeline.run_pannzer (module) code.process (module) code.utils (module) code.utils.basic_utils (module) code.utils.get_longest_transcript (module) code.utils.split_fa (module) copy_blast() (in module code.pipeline.run_pannzer) copy_input() (in module code.utils.basic_utils)

F

filter_mixed() (in module code.pipeline.mixed2gaf)

G

get_files_with_ext() (in module code.utils.basic_utils)

get_longest_transcript() (in module code.utils.get_longest_transcript)

I

init_dirs() (in module code.utils.basic_utils)

M

make_dir() (in module code.utils.basic_utils)

mixed2gaf() (in module code.pipeline.mixed2gaf)

R

run_pannzer() (in module code.pipeline.run_pannzer)

S

setup() (in module code.gomap_setup)

split_fasta() (in module code.utils.split_fa)