code.pipeline package

Submodules

code.pipeline.clean_input module

code.pipeline.make_aggregate module

code.pipeline.make_aggregate.aggregate_datasets(config)

code.pipeline.make_aggregate.clean_duplicate(config)

code.pipeline.make_aggregate.clean_redundant(config)

code.pipeline.mixed2gaf module

code.pipeline.mixed2gaf.filter_mixed(config)

code.pipeline.mixed2gaf.mixed2gaf(config)

code.pipeline.run_argot2 module

code.pipeline.run_iprs module

code.pipeline.run_mm_preproc module

code.pipeline.run_pannzer module

code.pipeline.run_pannzer.copy_blast(config)

code.pipeline.run_pannzer.run_pannzer(config)

code.pipeline.run_rbh_blast module

Module contents