code.process package¶
Submodules¶
code.process.clean_tair module¶
Clean TAIR peptide fasta to get longest sequence per gene_start Clean TAIR GO annotation file to convert it into GAF 2.0
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code.process.clean_tair.clean_tair_data(config, config_file)¶
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code.process.clean_tair.clean_tair_fasta(raw_fasta, clean_fasta, gene_start, trans_pattern)¶
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code.process.clean_tair.tair_go2gaf(in_go, out_gaf, config_file)¶
code.process.clean_uniprot module¶
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code.process.clean_uniprot.clean_raw_gaf(gaf_url, raw_gaf, tmp_gaf, clean_gaf, config)¶
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code.process.clean_uniprot.clean_uniprot_data(config, config_file)¶
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code.process.clean_uniprot.clean_uniprot_fasta(fasta_url, raw_fasta, clean_fasta, clean_gaf)¶
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code.process.clean_uniprot.download_gaf(gaf_url, tmp_gaf, raw_gaf, config)¶
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code.process.clean_uniprot.download_uniprot_fasta(fasta_url, raw_fasta)¶